Keto Carrot Cupcakes Recipe
If you’ve been hunting for the perfect baked treat that fits your low-carb lifestyle, look no further than these Keto Carrot Cupcakes! Fluffy, warmly spiced, and crowned with a luscious cream cheese frosting, they bring classic carrot cake joy without the sugar rush. Each bite delivers everything you love in a carrot cupcake—tender crumb, bursts of real carrot, and that dreamy tangy topping—all while keeping things keto-friendly. This recipe is an absolute must for anyone craving a touch of nostalgia with all the benefits of cleaner eating.

Ingredients You’ll Need
Making delicious Keto Carrot Cupcakes starts with simple, wholesome ingredients that work in harmony to deliver the best flavor and texture. Every item here is carefully chosen to keep the recipe low-carb, moist, and bursting with carrot cake goodness. Don’t be tempted to skip a thing—each one plays its part!
- Almond flour: Gives your cupcakes a soft, springy texture and keeps them gluten-free.
- Coconut flour: Adds subtle sweetness and the perfect bit of structure to the crumb.
- Powdered monkfruit/erythritol sweetener: Provides gentle, sugar-free sweetness with zero aftertaste.
- Xanthan gum: Binds the ingredients together, making for a tender yet cohesive cupcake.
- Baking powder: Ensures a beautiful rise and keeps the cupcakes light.
- Baking soda: Adds extra lift and enhances browning for that golden top.
- Cinnamon: Essential for bringing a warm, cozy spice to the cake.
- Nutmeg: Adds a deeper note of spice that screams “classic carrot cake.”
- Ginger (plus allspice and cloves, optional): For a hint of zesty warmth—play with the amount to suit your taste.
- Salt: Brings out the overall flavor and balances the sweetness.
- Butter or coconut oil (melted): Keeps the cupcakes rich, moist, and delicious.
- Eggs (room temperature): Binds and lifts the batter so the cupcakes bake up fluffy.
- Vanilla extract: Rounds out all the flavors with classic vanilla aroma.
- Blackstrap molasses (optional): Offers a touch of classic carrot cake depth without adding too many carbs—just a splash does wonders.
- Shredded carrots: The essential, naturally sweet hero, giving texture and color to every bite.
- Shredded unsweetened coconut: Adds a delicate chew and tropical flavor boost.
- Cream cheese (room temperature): The foundation of that irresistible tangy-smooth frosting.
- Butter (room temperature): Blends perfectly into the frosting for a silky finish.
- Vanilla extract (for frosting): Enhances the tang and rounds out the cream cheese flavor.
- Powdered monkfruit/erythritol sweetener (for frosting): Gives your frosting the same sweet satisfaction—without sugar.
How to Make Keto Carrot Cupcakes
Step 1: Prep and Preheat
Start by preheating your oven to 350°F. Grab your muffin tray and line it with cupcake wrappers—these not only keep things mess-free but help with easy removal later. If you want extra insurance, give the insides of the wrappers a light spray of oil so your cupcakes come out perfect every time.
Step 2: Mix the Dry Ingredients
In a large bowl, combine the almond flour, coconut flour, sweetener, xanthan gum, baking powder, baking soda, cinnamon, nutmeg, ginger (and optionally, allspice and cloves), and salt. Whisk well to make sure all those spices and leaveners are evenly distributed—no one wants a pocket of baking soda or missed cinnamon!
Step 3: Whisk the Wet Ingredients
In another bowl, combine the melted butter (or coconut oil), eggs, vanilla extract, and the blackstrap molasses if you’re using it. Give everything a good beat until smooth—this is where the rich, buttery base for your Keto Carrot Cupcakes begins.
Step 4: Bring It All Together
Pour the wet ingredients right over the dry mixture, then add in your freshly shredded carrots and coconut. Stir everything together with a spatula or wooden spoon until a thick, luscious batter forms. Make sure there are no dry patches—it’ll be thick but that’s how you know your cupcakes will bake up dense and moist, just as they should!
Step 5: Fill and Bake
Use a muffin scoop or two spoons to evenly divide your batter among the 12 muffin cups. Smooth the tops just a bit for a rounded shape. Slide the tray into your preheated oven and bake for 30-35 minutes, or until the tops are risen and a toothpick comes out clean. That classic carrot cake aroma will let you know you’re on the right track!
Step 6: Make the Cream Cheese Frosting
While the cupcakes are baking, whip up the frosting. In a bowl, blend together the cream cheese, butter, vanilla extract, and sweetener using a hand mixer. Start on low speed and increase once it starts to combine. Beat until the mixture is creamy, smooth, and completely lump-free. This dreamy topping is the crown jewel of your Keto Carrot Cupcakes.
Step 7: Cool and Frost
Let the cupcakes rest in the tray for a few minutes, then transfer them to a wire rack to cool for about 20 minutes. Don’t rush this step—warm cupcakes and cream cheese frosting are a messy combo! Once cool, pipe or spread the frosting on top. For piping, a ziplock bag with the corner snipped off works just as well as a piping bag, letting you get creative with your swirl.
How to Serve Keto Carrot Cupcakes

Garnishes
To elevate your Keto Carrot Cupcakes, try a sprinkle of extra shredded coconut, finely chopped pecans, or even a light dusting of cinnamon over the frosting. Each enhancer brings out different flavors and adds an inviting look—the perfect finishing touch for these pretty treats.
Side Dishes
Serve your cupcakes with a hot mug of coffee, a soothing cup of tea, or alongside a dollop of unsweetened whipped cream. If you’re making them for brunch, they pair beautifully with a crisp green salad or a platter of juicy berries for a fresh contrast to the rich cake.
Creative Ways to Present
Layer your frosted Keto Carrot Cupcakes on a tiered cake stand for a showstopper display at a party, or even try baking them in mini-muffin tins for bite-sized goodness. You can also frost only half, then swirl the frosting with a little extra cinnamon for a beautiful two-tone look that always gets compliments!
Make Ahead and Storage
Storing Leftovers
Pop any leftover cupcakes in an airtight container and set them in the fridge, where they’ll stay fresh for up to a week. The cool environment even helps the cream cheese frosting set up perfectly, making your Keto Carrot Cupcakes even more delightful a day or two later.
Freezing
If you want to make a big batch, you’re in luck! Keto Carrot Cupcakes freeze beautifully—just store them (unfrosted is best, but frosted works too) in a single layer in a freezer-safe container. Thaw at room temperature or in the fridge overnight, then frost if you haven’t already.
Reheating
To bring cold or frozen cupcakes back to their soft, bakery-fresh best, let them reach room temperature first. If you love a warm cupcake, a quick 10-second zap in the microwave (skip this if they’re already frosted) is all you need. Just be careful not to overheat and melt the frosting!
FAQs
Can I make these Keto Carrot Cupcakes dairy-free?
Absolutely! Swap the butter for coconut oil and use a dairy-free cream cheese alternative for the frosting. The cupcakes still turn out rich and delicious.
Is the blackstrap molasses necessary for the recipe?
No, it’s optional. A small amount gives a classic carrot cake flavor without adding significant carbs, but your cupcakes will still be delightful if you leave it out.
Can I use pre-shredded carrots from the store?
Freshly shredded carrots are best for moisture and texture, but pre-shredded will do in a pinch—just check that they aren’t too dry or thick.
How sweet are these Keto Carrot Cupcakes?
The cupcakes are gently sweet, not overly sugary. Feel free to adjust the amount of sweetener in both the cake and frosting to fit your personal preference.
Can I use other sweeteners besides monkfruit/erythritol?
Yes, but for best texture and taste, stick to powdered keto sweeteners. Granular versions may leave a gritty feel, so always opt for powdered if possible.
Final Thoughts
If you’re looking for a treat that delights your tastebuds and fits beautifully into a keto lifestyle, you simply have to try these Keto Carrot Cupcakes. They’re tender, satisfying, and just the thing when you want a bakery-style dessert—no sugar, no guilt, all the joy!
PrintKeto Carrot Cupcakes Recipe
These Keto Carrot Cupcakes are a delightful low-carb treat that combines the warm flavors of carrot cake with a creamy cream cheese frosting. Perfect for anyone following a keto lifestyle or looking for a healthier dessert option.
- Prep Time: 20 minutes
- Cook Time: 35 minutes
- Total Time: 55 minutes
- Yield: 12 cupcakes 1x
- Category: Dessert
- Method: Baking
- Cuisine: Keto
- Diet: Low Calorie
Ingredients
Carrot Cake:
- 2 cups almond flour (224g)
- 6 tbsp coconut flour (42g)
- 3/4 cup powdered monkfruit/erythritol sweetener (145g)
- 1 tsp xanthan gum
- 1 tsp baking powder
- 1/2 tsp baking soda
- 1/2 tbsp cinnamon
- 1/4 tsp nutmeg
- 1/8 tsp each ginger (allspice and cloves, optional)
- 1/4 tsp salt
- 1/2 cup butter or coconut oil (melted, 120g)
- 2 eggs (room temperature)
- 2 tsp vanilla extract
- 1 tsp blackstrap molasses (optional)
- 1 1/2 cup shredded carrots (180g)
- 1/4 cup shredded unsweetened coconut (60g)
Cream Cheese Frosting:
- 1 8 oz pkg cream cheese (room temperature)
- 1/2 cup butter (room temperature)
- 1 tsp vanilla extract
- 1 cup powdered monkfruit/erythritol sweetener (170g)
Instructions
- Pre-heat oven to 350*F. In a large bowl, add all of your dry ingredients and mix.
- In another medium bowl, add your melted butter, eggs, vanilla and molasses and beat or whisk well to combine.
- Pour your wet ingredients into the dry along with your shredded carrots and coconut.
- Mix until a thick dough forms.
- Line a muffin tray with wrappers (lightly grease the insides for easy removal) and use a muffin scoop to evenly disperse the batter between 12 cups.
- Bake for 30-35min or until tops have risen and a toothpick comes out clean.
- Meanwhile, you can make your frosting by combining all of the frosting ingredients in a bowl and using a beater to blend until smooth.
- Cool on a wire rack for ~20min before icing the cupcakes.
- To ice them, use a piping back OR a plastic ziplock. Fill the bag with icing (for a ziplock cut off the corner once filled) and begin to pipe in a circular motion starting from the edge to the centre of the cupcake. Repeat for each cupcake.
- Serve immediately or store in an airtight container in the fridge for up to a week for a future snack! Enjoy your Keto Carrot Cupcakes!
Nutrition
- Serving Size: 1 cupcake
- Calories: 240
- Sugar: 2g
- Sodium: 210mg
- Fat: 20g
- Saturated Fat: 12g
- Unsaturated Fat: 6g
- Trans Fat: 0g
- Carbohydrates: 8g
- Fiber: 4g
- Protein: 6g
- Cholesterol: 80mg
Keywords: Keto, Carrot Cupcakes, Low Carb, Dessert, Cream Cheese Frosting